Preheat your oven to 350 degrees. In a large bowl, whisk together the eggs with salt and pepper. Add your cooked and cooled broccoli, chopped cooked bacon, chives and nutritional yeast. Stir to combine.
Grease a muffin tin lightly. Fill the muffin tray about 90% full with the muffin mixture, evenly dispensing the ingredients.
Bake for 22-25 minutes, or until the eggs are fully set. Serve hot or at room temperature.